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Please cite:
O'Dushlaine C, T. and D.C. Shields. 2006. Tools for the identification of variable and potentially variable tandem repeats. BMC Genomics 7: 290.

See also PPR

NOTE:
This service is not guaranteed. It is dependent on the user load generated.
Please download and run the scripts locally if you intend to run large jobs.



SECTION 1: This section allows you to detect tandem repeats in sequences and predict if they are potentially polymorphic - PolyPredictR
Note: It must always be completed


Choose Tandem Repeats finder parameters and paste/upload sequences:

Tandem Repeats Finder parameters: [?]              

Enter reference DNA sequences/genomes here in FASTA format: [?]
(sequences may be in 5' or 3' orientation)



OR upload  




SECTION 2: Complete this section to search tandem repeats found in the reference(s) against one or more sequences - VNTRfinder
Note: Leave this section empty if you only want to predict potentially polymorphic repeats

Enter target DNA sequences/genomes here in FASTA format: [?]



OR upload  



Select minimum flanklength:                             [?]
Select maximum mismatch tolerance in flanks: [?]
Keep results where hit [?]

Perform search both ways - search repeats in reference against target and vice versa


     


suggestions/queries?

or vntrfinder@gmail.com
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